PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IBY8N
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 374aa    MW: 40922.4 Da    PI: 5.8013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IBY8NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.66.9e-16146192455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Araip.IBY8N 146 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 192
                  6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-20139202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-20139202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.84E-17145196No hitNo description
PfamPF000102.4E-13146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGDHMYNYDK NLSSSSSSQD EISLFLRQIL LRSSQPHQDS PPPPQQQQQL PSSSSSSCFP  60
STSQLQDGKI SALGSTRAGF LSASSMKGHG GNSAPNVSSS SVGLSANDTD DYDCESEEGV  120
EALAEDVPAK PVPSRSSSKR SRAAEVHNLS EKRRRSRINE KMKALQNLIP NSNKTDKASM  180
LDEAIEYLKQ LQLQVQMLSM RNGLSLHPMS FPEGLQPLQF SRMSMEFSEE NRAIPVNMTE  240
SLPLHQGNPL PYASLPNKPT MPNQPSVTYP SYLNNSEAPF GLEPPILAHI KHLQPGRFSE  300
AHREDTLQQQ QSNASHSDTD PLGGSQAVKE LETGTMPTTS LSFDLQTCEP KDNNPLQICI  360
AGRDQSSSVI IRNS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201724.10.0PREDICTED: transcription factor SPATULA isoform X4
TrEMBLA0A151TIE61e-140A0A151TIE6_CAJCA; Transcription factor SPATULA
STRINGGLYMA11G05810.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-45bHLH family protein